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Popular tool citations

chevron_left Contact map prediction Multiple amino acid sequence alignment Pairwise structure alignment Amino acid sequence homology search Peptide binding site prediction chevron_right
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SMS specifications

Information


Unique identifier OMICS_15031
Name SMS
Alternative names STING Millennium Suite, STING Report
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Goran Neshich <>

Publications for STING Millennium Suite

SMS in publications

 (3)
PMCID: 3815110
PMID: 24223912
DOI: 10.1371/journal.pone.0079240

[…] the pymol molecular graphics system, version 1.5.0.4 schrödinger, llc., the identification of contacts for the smase d (pdb code “1xx1.pdb”) was obtained using the sting java protein dossier and sting report [,,] and its sting contacts module []. protein structure images were created using the pymol molecular graphics system, version 1.5.0.4 schrödinger, llc. data regarding contact type […]

PMCID: 1762304
PMID: 17183712
DOI: 10.1371/journal.pone.0000008

[…] [39; http://cupsat.uni-koeln.de]. the structural contacts for individual amino acids in the structure were analyzed using deepview–swiss-pdbviewer v. 3.7 [40; http://www.expasy.org/spdbv/] and sting report [41; http://trantor.bioc.columbia.edu/sms/]., we are grateful to dr s. weller for providing us schiedea leaf material, to dr z. yang and dr m. anisimova for advice on paml, to dr k. […]

PMCID: 1160158
PMID: 15980473
DOI: 10.1093/nar/gki397

[…] local files containing protein structures (either modeled or not yet deposited to the protein data bank) so that they can be used by the principal sting components: javaprotein dossier (jpd) and sting report. the current capabilities of the new sting version and a couple of biologically relevant applications are described here. we have provided an example where diamond sting identifies […]


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SMS institution(s)
Núcleo de Bioinformática, Centro Nacional de Pesquisa Agropecuária, Empresa Brasileira de Pesquisa Agropecuária, Campinas, Brazil; Laboratório de Bioinformática, Embrapa/Recursos Genéticos e Biotecnologia, Universidade Católica de Brasília, Brasilia, Brazil; Laboratório de Bioinformática, Universidade Católica de Brasília, Brasilia, Brazil
SMS funding source(s)
This work was supported in part by the following grants: FAPESP 01/08895-0, FINEP 1945/01 and CNPq 521093/ 2001-5 (NV) and by NSF grant #DBI-9904841.

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