smyRNA statistics

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smyRNA specifications

Information


Unique identifier OMICS_23837
Name smyRNA
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.2
Stability No
Maintained No

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Publication for smyRNA

smyRNA in publications

 (3)
PMCID: 4066759
PMID: 24771344
DOI: 10.1093/nar/gku325

[…] of the e. coli genome (table )., we also performed an independent test to compare the prediction performance of our method with the performances of two recently developed approaches that used svms: smyrna () and ncrnascout (). the smyrna method uses primary sequence motif features to detect ncrnas, and the ncrnascout uses both a primary sequence motif and secondary structure-based features […]

PMCID: 3596055
PMID: 23516022
DOI: 10.4137/BBI.S11213

[…] srnapredict, srnascanner, and srnafinder, which uses either genomic dna sequence for signal prediction, or pre-computed signal coordinates from other databases. generic methods such as nocornac and smyrna make use of antisense rna transcript expression-profiling and ab initio structural sequence motif-based discovery, respectively., such collective efforts have lead to an explosion […]

PMCID: 5054157
PMID: 22768985
DOI: 10.1016/j.gpb.2012.05.004

[…] multiple alignment as ncrna or not., there are relatively fewer tools in the third category designed for ab initio ncrna discovery. two bioinformatics tools in this category are ncrnascan and smyrna . given a genomic sequence and a set of ncrnas, these tools are capable of discovering novel ncrnas (which may or may not belong to known ncrna families). while ncrnascan relies on parameters […]


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smyRNA institution(s)
School of Computing Science, Simon Fraser University, Burnaby, BC, Canada; School of Computer Science, University of Waterloo, Waterloo, ON, Canada; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada
smyRNA funding source(s)
Supported by NSERC, CRC Program, CFI, MITACS, and MSFHR.

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