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SNAVI specifications

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Unique identifier OMICS_04122
Name SNAVI
Alternative name Signaling Networks Analysis and VIsualization
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Windows
License GNU General Public License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes

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Documentation


Publication for Signaling Networks Analysis and VIsualization

SNAVI in publications

 (3)
PMCID: 4798961
PMID: 26894958
DOI: 10.7554/eLife.10421.041

[…] containing 14,191 genes and more than 197,000 interactions () compiled from various online databases: biogrid (), mint (), kegg (), ppid (), hprd (), dip (), bind (), intact (), innatedb (), and snavi (). to reduce the false positive interactions in the background network, we excluded interactions reported using high-throughput approaches. direct interactions with other seed genes were kept […]

PMCID: 3248428
PMID: 22219718
DOI: 10.1371/journal.pcbi.1002319

[…] literature-based protein-protein interactome we developed for the program genes2networks . the ppis are from 12 databases: hprd , mint , dip , mips , pdzbase , ppid , bind , reactome , biogrid , snavi , stelzl et al. , and vidal and co-workers . these databases contain direct physical interactions for mouse, rat, and human proteins containing 11,438 proteins connected through 84,047 […]

PMCID: 2847239
PMID: 20047968
DOI: 10.1093/nar/gkp1178

[…] in vivo biotinylated target-proteins and streptavidin with the usage of a newly identified epitope of the publicly shared sb1 monoclonal antibody we created a novel in vivo fluorescent tag, the snavi-tag. we show the versatile application of the snavi-tag in escherichia coli, vertebrate cells and in c. elegans for tandem affinity purification of protein complexes, western blotting and also […]

SNAVI institution(s)
Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY, USA

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