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SNCID specifications

Information


Unique identifier OMICS_11195
Name SNCID
Alternative name Stanley Neuropathology Consortium Integrative Database
Restrictions to use None
Data access Browse
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline S. Kim

Publication for Stanley Neuropathology Consortium Integrative Database

SNCID citations

 (5)
library_books

Post mortem molecular profiling of three psychiatric disorders

2017
Genome Med
PMCID: 5534072
PMID: 28754123
DOI: 10.1186/s13073-017-0458-5

[…] f SZ-associated genes by validating our observed expression changes in an independent cohort. To accomplish this, we examined gene expression differences in the AnCg between SZ and CTL samples in the SNCID RNA-seq Array dataset [], revealing 1003 genes altered (DESeq2 uncorrected p value <0.05) in both datasets (Fisher’s p value <1E-16; Additional file : Table S7). The magnitude and direction of c […]

call_split

The protocadherin 17 gene affects cognition, personality, amygdala structure and function, synapse development and risk of major mood disorders

2017
Mol Psychiatry
PMCID: 5794872
PMID: 28070120
DOI: 10.1038/mp.2016.231
call_split See protocol

[…] We downloaded raw RNA-sequencing reads from the SMRI data set (http://sncid.stanleyresearch.org/) in the FASTQ file format. The RNA-seq data were from frontal cortex (15 BPD, 15 MDD and 15 healthy controls) generated by SMRI neuropathology collection. Reads after adapto […]

library_books

Consistently altered expression of gene sets in postmortem brains of individuals with major psychiatric disorders

2016
PMCID: 5048210
PMID: 27622934
DOI: 10.1038/tp.2016.173

[…] ll sequencing lane and samples from all diagnostic groups were distributed randomly across the sequencing runs. All of the raw sequencing files and topHat alignments are available for download at www.sncid.org. Two outliers were removed from each collection on the basis of the results of principal components analyses detailed in the supplement and . The remaining samples are well matched for demog […]

library_books

Expression of microRNAs and Other Small RNAs in Prefrontal Cortex in Schizophrenia, Bipolar Disorder and Depressed Subjects

2014
PLoS One
PMCID: 3903529
PMID: 24475125
DOI: 10.1371/journal.pone.0086469

[…] verlapping sequences in the 20–24 nt. size range was also altered at p<0.05All data described in this paper have been deposited into the Stanley Neuropathology Consortium Integrative Database, http://sncid.stanleyresearch.org/. […]

library_books

Gene expression profiling by mRNA sequencing reveals increased expression of immune/inflammation related genes in the hippocampus of individuals with schizophrenia

2013
PMCID: 3818014
PMID: 24169640
DOI: 10.1038/tp.2013.94

[…] rmed to identify modules associated with schizophrenia and/or confounding factors. Raw data for the density of PV-containing neurons in the hippocampus were used as a trait after downloading from the SNCID in order to identify modules that may be associated with the density of these neurons. The co-expression module was visualized using VisANT. […]

Citations

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SNCID institution(s)
Stanley Brain Research Laboratory, Stanley Medical Research Institute, Chinakville, MD, USA; Department of Bio and Brain Engineering, KAIST, Yuseong-gu, Daejeon, Korea

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