SNiPer-HD statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

SNiPer-HD specifications


Unique identifier OMICS_00735
Name SNiPer-HD
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Dietrich A. Stephan <>

Publication for SNiPer-HD

SNiPer-HD in publications

PMCID: 2679732
PMID: 19236714
DOI: 10.1186/1471-2105-10-68

[…] section summarizes the key points., there is currently a wide variety of programs available for genotyping snps. the most popular supporting affymetrix are rlmm [], brlmm [], crlmm [], chiamo [], sniper-hd [], and mams []. the most popular program for illumina is their own proprietary software, beadstudio, but other methods have been recently suggested by moorhead et. al. [], teo et. al. [], […]

PMCID: 2537568
PMID: 18793462
DOI: 10.1186/1471-2105-9-S9-S17

[…] 500 k array set data are usually determined by the calling algorithm brlmm [] embedded in affymetrix software packages. algorithms developed by other laboratories such as plasq [], gel [], crlmm [], sniper-hd [], mams [], and chiamo [] are also utilized., the mpam algorithm was developed for analysis of raw data (i.e., the cel files) from the first generation of affymetrix mapping 10 k array […]

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SNiPer-HD institution(s)
Computational Biology Division Phoenix, Phoenix, AZ, USA

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