Find SNPs/indels in a bacterial genome from NGS reads. Official website Specifications Classification
Specifications Desktop app Software type: Package Interface: Command line interface Restrictions to use: None Operating system: Unix/Linux, Mac OS License: GNU General Public License version 2.0 Computer skills: Advanced Stability: Stable Write a review View all reviews 0 user review Write a review about this tool Sign up for free to join and share with our community.Already have an account? Sign in to review this tool. Cancel No review has been posted. Open an issue View all issues 0 issue Open an issue about this tool Sign up for free to join and share with our community.Already have an account? Sign in to open an issue. Cancel No open issue. Classification High-throughput sequencing Whole-genome sequencing Germline SNP detection High-throughput sequencing Whole-genome sequencing Indel detection Literature (Neuman et al., 2013) Analysis of insertion-deletion from deep-sequencing data: software evaluation for optimal detection. Briefings in bioinformatics. PMID: 22707752 59 related tools 2kplus2 OMIC_06149 Atlas2 OMIC_00051 Bambino OMIC_00876 Churchill OMIC_07244 ComB OMIC_00053 CoNAn-SNV OMIC_00054 CopySeq OMIC_00055 Cortex OMIC_00056 Discoverin… OMIC_00267 Family-bas… OMIC_00058 FamLDCalle… OMIC_11038 FermiKit OMIC_09503 FreeBayes OMIC_00059 GATK Unifi… OMIC_00080 GeneticThe… OMIC_07917 Genome Ana… OMIC_00286 Genomic An… OMIC_00060 glfMultipl… OMIC_00061 glfSingle OMIC_05117 Halvade OMIC_08309 Illuminato… OMIC_02165 Indelocato… OMIC_00098 Isaac Vari… OMIC_05481 KvarQ OMIC_05974 LoFreq OMIC_00063 MAFsnp OMIC_10661 Mapping an… OMIC_00668 marginAlig… OMIC_07582 MoDIL OMIC_00066 MSIsensor OMIC_02192 Multi-samp… OMIC_11067 nanopore OMIC_07581 Platypus OMIC_00068 PyroHMMsnp OMIC_02617 PyroHMMvar OMIC_00069 QuadGT OMIC_02108 QualitySNP… OMIC_00070 RAre REfer… OMIC_08308 realSFS OMIC_00071 Reveel OMIC_09916 Revise Sim… OMIC_05468 RVD OMIC_00073 SAMtools OMIC_00090 SeqEM OMIC_00074 SeqHBase OMIC_07580 Slider OMIC_07358 Sniper OMIC_07918 SNPest OMIC_08845 SNPSVM OMIC_03838 SNPTools OMIC_00075 SNVerGUI OMIC_09775 SOAPsnp OMIC_00078 SolSNP OMIC_00079 Syzygy OMIC_02166 TrioCaller OMIC_07458 Ultrafast … OMIC_07238 VAAL OMIC_02170 VariantMas… OMIC_02261 VARiD OMIC_02163 Show more related tools (55)