SnoopCGH statistics

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Associated diseases

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SnoopCGH specifications


Unique identifier OMICS_00736
Name SnoopCGH
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for SnoopCGH

SnoopCGH in publications

PMCID: 4673709
PMID: 26645535
DOI: 10.1186/s12864-015-2253-2

[…] ratios was used to guide the selection of the three user-defined parameters applied to the automated segmentation procedure. additional analyses were performed with jcfread_cgh (matlab script), and snoopcgh []., the minimum length of these cnvs was calculated based on the distance between the first and last probe inside the region that had been duplicated or deleted. the breakpoint of the cnvs […]

PMCID: 3679970
PMID: 23442253
DOI: 10.1186/1471-2164-14-128

[…] geo series accession number [geo:gse25656]. data refers to log2-ratio between intensities of these two strains in relation to those obtained from the 3d7 reference strain. we used the software snoopcgh as a visualisation tool []. after removing probes in regions not considered in our coverage data analysis, we applied the following strategy to detect cnvs: (1) obtain a segmented profile […]

PMCID: 3288012
PMID: 22384044
DOI: 10.1371/journal.pone.0031623

[…] package (). in addition supplemental edge analysis was done to identify additional and potentially useful transporter genes. for the segmentation analysis of chromosomes 2 and 10 deletions snoopcgh software was used with smith–waterman algorithm implementation at p<0.01., rna used for cdna synthesis was obtained from the same v1s (control) and v1slm (we used the same rna […]

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SnoopCGH institution(s)
Wellcome Trust Sanger Institute, Hinxton, The Weatherall Institute of Molecular Medicine and Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK

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