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|Alternative name||snoRNA Orthological Gene Database|
|Restrictions to use||Academic or non-commercial use|
|User data submission||Not allowed|
- person_outline Naoya Kenmochi
Publication for snoRNA Orthological Gene Database
The circadian dynamics of small nucleolar RNA in the mouse liver
[…] d in TPM using the Kallisto pseudo-alignment technique . This requires the set of transcripts of interest to be compiled (Ensembl GRCm38) to which we added the 5.8S, 18S and 28S pre-rRNA sequences (snOPY database ). The large proportions of snoRNA and rRNA species, and their variation over the day in nascent sequencing data were unexpected but readily apparent (a). It was evident that mRNA con […]
Phylogenetic distribution of plant snoRNA families
[…] ants) eudicots, we preferrentially included species for which snoRNAs had been described in the literature.We collected all available plant snoRNA sequences from the SnoRNA orthologous gene database (SNOPY ) and the plant snoRNA database . In addition we extracted snoRNA sequences from the literature [, , –].We considered only the rRNAs/snRNAs as potential targets. Ribosomal RNA sequences of t […]
Structural and Functional Characterization of Ribosomal Protein Gene Introns in Sponges
[…] A snoRNAs in each of the sponge (). With a more detailed analysis we were able to identified only three snoRNAs in all four sponges that match a sequence motif of known snoRNAs available on Rfam, the snOPY database and/or the snoRNA-LBME database. The first snoRNA is the sponge ortholog of the human C/D box snoRNA SNORD100 (HBII-429) found in the RPS12 gene. We analyzed introns of RPS12 genes in v […]
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