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SnoReport specifications


Unique identifier OMICS_06249
Name SnoReport
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for SnoReport

SnoReport in publications

PMCID: 5791967
PMID: 29385175
DOI: 10.1371/journal.pone.0189947

[…] sites were compiled and fed into the snoscan program for guide box c/d snorna prediction. hits with scores higher than 20 and in the correct orientation were selected for further analysis. both the snoreport and snoseeker programs were employed to locate potential orphan box c/d snornas. output generated was compared and contrasted by using vlookup function in excel to identify similar hits […]

PMCID: 4914119
PMID: 27174936
DOI: 10.1093/nar/gkw386

[…] sufficiently or completely cover the loci., to uncover additional snorna genes that have supporting expression evidence, we first collected predictions of two computational tools, snoseeker () and snoreport (), that have been specifically designed to predict snorna genes. due to the high computational demand of these tools, we restricted the search space to genomic regions that were supported […]

PMCID: 4889943
PMID: 27016738
DOI: 10.1093/nar/gkw195

[…] performed using unipro ugene (). visualization of the phylogenetic tree was performed using mega ()., a two-stage method was used to identify putative snornas in the novel mcar population: first, snoreport () was used to search for a potential snorna sequence within −20 to +350 b of the 5′ base of a novel tag cluster, and then secondly, for putative cd snornas, we examined within −5 to +25 b […]

PMCID: 4660826
PMID: 26607788
DOI: 10.1186/s12864-015-2221-x

[…] coding capability. to maintain stringent parameters for the selection of ncrnas candidates, we excluded these sequences from further analyses., the remaining 121 ncrna candidates were analyzed using snoreport, an algorithm that predicts both c/d and h/aca box snorna/scarnas [], and were subsequently processed with rfam tools [] to detect any rna family signature in the remaining predictions. […]

PMCID: 5932544
DOI: 10.3390/ncrna1020139

[…] kept. to alleviate this limitation, we used every position in the d. melanogaster rrnas as a putative methylation site. genomic regions surrounding these initial candidates were re-evaluated with snoreport-1.0 [] using default parameters, to increase the sensitivity of the search. this program is designed to improve the prediction of snornas with non-canonical antisense elements, and thus […]

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SnoReport institution(s)
Institute for Theoretical Chemistry, University of Vienna, Wien, Austria

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