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Small nucleolar RNA gene detection software tools | Genome annotation

Small nucleolar RNAs (snoRNAs) represent an abundant group of non-coding RNAs in eukaryotes. They can be divided into guide and orphan snoRNAs according to the presence or absence of antisense sequence to rRNAs or snRNAs. Source text: Yang et al.,…
snoscan
Desktop
Web

snoscan

A web application for the detection of methylation-guide snoRNAs. snoscan has…

A web application for the detection of methylation-guide snoRNAs. snoscan has successfully detected methylation-guide snoRNAs in a variety of eukaryotes and archaea.

snoGPS
Desktop
Web

snoGPS

A program for computationally screening genomic sequences for H/ACA guide…

A program for computationally screening genomic sequences for H/ACA guide snoRNAs. The program implements a deterministic screening algorithm combined with a probabilistic model to score gene…

ptRNApred
Desktop

ptRNApred

A tool to detect and classify subclasses of non-coding RNA that are involved in…

A tool to detect and classify subclasses of non-coding RNA that are involved in the regulation of post-transcriptional modifications or DNA replication. ptRNApred (i) detects RNA sequences coding for…

snoStrip
Desktop
Web

snoStrip

An automatic annotation pipeline developed specifically for comparative…

An automatic annotation pipeline developed specifically for comparative genomics of small nucleolar RNAs. snoStrip makes use of sequence conservation, canonical box motifs as well as secondary…

SnoReport
Desktop

SnoReport

A combination of RNA secondary structure prediction and machine learning that…

A combination of RNA secondary structure prediction and machine learning that is designed to recognize the two major classes of snoRNAs, box C/D and box H/ACA snoRNAs, among ncRNA candidate…

snoSeeker
Desktop
Web

snoSeeker

A computational package which includes two novel snoRNA-searching programs,…

A computational package which includes two novel snoRNA-searching programs, CDseeker and ACAseeker, specific to the detection of C/D snoRNAs and H/ACA snoRNAs, respectively. Based on these…

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