snoscan pipeline

snoscan specifications

Information


Unique identifier OMICS_09905
Name snoscan
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Sequence
Input format FASTA, GenBank, EMBL, GCG, IG, Raw
Output data The snoscan outputs consist of a summary information line for each predicted snoRNA sequence, followed by the candidate.
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Todd M. Lowe <>

Information


Unique identifier OMICS_09905
Name snoscan
Interface Web user interface
Restrictions to use None
Input data Sequence
Input format FASTA, GenBank, EMBL, GCG, IG, Raw
Output data The snoscan outputs consist of a summary information line for each predicted snoRNA sequence, followed by the candidate.
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Todd M. Lowe <>

Publications for snoscan

snoscan IN pipeline

2013
PMCID: 3695527
PMID: 23620296
DOI: 10.1093/nar/gkt317

[…] were used for further computational analysis of the data: rna folding [mfold (14)], trna gene prediction [trnascan-se (15), genomic trna database (16)], small nucleolar rna (snorna) gene prediction [snoscan (17)], crrna identification [crisprdb (18)], rna alignments [clustalw2 (19)] and rna visualization [varna (20)]. gene annotations were obtained from genbank., in all, 10 ng of an m. kandleri […]

snoscan institution(s)
Department of Biomolecular Engineering and the UCSC RNA Center, University of California Santa Cruz, Santa Cruz, CA, USA

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