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Uses paired-end transcriptome sequencing data to recognize fusion transcripts. SnowsShoes-FTD integrates several subroutines to build template regions for polymerase chain reaction (PCR) primer design. It offers a way to simplify quick PCR validations. This tool is also able to construct template regions for acid sequences of the putative in-frame fusion gene products, to ease predictions concerning the functional significance of the fusion events.

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SnowsShoes-FTD forum

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SnowsShoes-FTD classification

SnowsShoes-FTD specifications

Unique identifier:
OMICS_01356
Software type:
Package/Module
Restrictions to use:
None
License:
GNU General Public License version 2.0
Stability:
Stable
Name:
SnowShoes-Fusion Transcript Detection
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

SnowsShoes-FTD distribution

versioning

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No versioning.

SnowsShoes-FTD support

Maintainers

  • Yan W. Asmann <>
  • Aubrey Thompson <>

Credits

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Publications

Institution(s)

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, MN, USA; Department of Cancer Biology, Mayo Clinic Comprehensive Cancer Center, Jacksonville, FL, USA; Illumina Inc., Hayward, CA, USA; Department of Medicine, Mayo Clinic, Jacksonville, FL, USA

Funding source(s)

Supported by 26.2 with Donna Foundation; Bankhead Coley program of the State of Florida (10-BG012-1); Mayo Foundation and the Mayo Clinic Comprehensive Cancer Center (CA151160); by a generous gift from James and Donna Barksdale.

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