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SNP and indel Imputability

A publicly available SNP and indel imputability database, aiming to provide direct access to imputation accuracy information for markers identified by the 1000 Genomes Project across four major populations and covering multiple GWAS genotyping platforms. SNP and indel imputability information can be retrieved through a user-friendly interface by providing the ID(s) of the desired variant(s) or by specifying the desired genomic region. The query results can be refined by selecting relevant GWAS genotyping platform(s).

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SNP and indel Imputability classification

SNP and indel Imputability specifications

Restrictions to use:

SNP and indel Imputability support


  • Yun Li <>


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Department of Genetics, University of North Carolina, Chapel Hill, NC, USA; Department of Computer Science, University of North Carolina, Chapel Hill, NC, USA; Department of Biostatistics, University of North Carolina, Chapel Hill, NC, USA

Funding source(s)

The National Institute of Health grants R01-HG006292, R01-HG006703, R01-DK078150

Link to literature

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