SNP Cutter statistics

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Associated diseases

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SNP Cutter specifications

Information


Unique identifier OMICS_14880
Name SNP Cutter
Interface Web user interface
Restrictions to use None
Input data SNPs to be genotyped, a customizable list of restriction enzymes and other parameters for primer design.
Programming languages Perl
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for SNP Cutter

SNP Cutter in publications

 (2)
PMCID: 2648977
PMID: 19134169
DOI: 10.1186/1471-2229-9-4

[…] can be found in []., snps for which the pyrosequencing assay design turned out to be difficult were subjected to caps marker design with the snp2caps program [] or to dcaps development with the snp cutter program []. the digestion reaction was carried out in a total reaction volume of 25 μl with 20 μl pcr product, 1 u restriction enzyme and a final concentration of 1× digestion buffer. […]

PMCID: 2276194
PMID: 18291022
DOI: 10.1186/1471-2350-9-8

[…] in the control group was due to systematical genotyping error, all subjects in this group previously genotyped as tt were genotyped by rflp, using primers designed with the web-based tool snp cutter [] and the enzyme tsp509 (details available upon request). the rationale behind this latter method was that any individual falsely genotyped as tt by the taqman method would be genotyped […]


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SNP Cutter institution(s)
National Laboratory of Medical Genetics of China, Central South University, Changsha, Hunan, China; Department of Psychiatry, University of Chicago, Chicago, IL, USA
SNP Cutter funding source(s)
This work was supported by a Young Investigator Grant from NARSAD (National Alliance for Research in Schizophrenia and Affective Disorders) and NIH R01 MH65560-01 and R01 MH59535 and by the Chinese State ‘863’ program (2002BA711A07-08, 2002BA711A07-03), ‘973’ program (2001CB510302, 2004CB518601) and National Natural Science Foundation of China (30070410, 30123006, 30371530 and 30340078).

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