SNP Cutter statistics

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Associated diseases

Associated diseases

SNP Cutter specifications


Unique identifier OMICS_14880
Name SNP Cutter
Interface Web user interface
Restrictions to use None
Input data SNPs to be genotyped, a customizable list of restriction enzymes and other parameters for primer design.
Programming languages Perl
Computer skills Basic
Stability No
Maintained No


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Publication for SNP Cutter

SNP Cutter in publications

PMCID: 2648977
PMID: 19134169
DOI: 10.1186/1471-2229-9-4

[…] can be found in []., snps for which the pyrosequencing assay design turned out to be difficult were subjected to caps marker design with the snp2caps program [] or to dcaps development with the snp cutter program []. the digestion reaction was carried out in a total reaction volume of 25 μl with 20 μl pcr product, 1 u restriction enzyme and a final concentration of 1× digestion buffer. […]

PMCID: 2276194
PMID: 18291022
DOI: 10.1186/1471-2350-9-8

[…] in the control group was due to systematical genotyping error, all subjects in this group previously genotyped as tt were genotyped by rflp, using primers designed with the web-based tool snp cutter [] and the enzyme tsp509 (details available upon request). the rationale behind this latter method was that any individual falsely genotyped as tt by the taqman method would be genotyped […]

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SNP Cutter institution(s)
National Laboratory of Medical Genetics of China, Central South University, Changsha, Hunan, China; Department of Psychiatry, University of Chicago, Chicago, IL, USA
SNP Cutter funding source(s)
This work was supported by a Young Investigator Grant from NARSAD (National Alliance for Research in Schizophrenia and Affective Disorders) and NIH R01 MH65560-01 and R01 MH59535 and by the Chinese State ‘863’ program (2002BA711A07-08, 2002BA711A07-03), ‘973’ program (2001CB510302, 2004CB518601) and National Natural Science Foundation of China (30070410, 30123006, 30371530 and 30340078).

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