SNP Cutter statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool SNP Cutter
info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left SNP detection chevron_right
Want to access the full stats & trends on this tool?

SNP Cutter specifications

Information


Unique identifier OMICS_14880
Name SNP Cutter
Interface Web user interface
Restrictions to use None
Input data SNPs to be genotyped, a customizable list of restriction enzymes and other parameters for primer design.
Programming languages Perl
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for SNP Cutter

SNP Cutter citations

 (2)
library_books

A Toolkit for bulk PCR based marker design from next generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.)

2012
BMC Genomics
PMCID: 3534495
PMID: 23157543
DOI: 10.1186/1471-2164-13-637

[…] of flanking PCR primer pairs for large numbers of targets.Web-based tools which have been reported for design of CAPS markers from small numbers of sequences include BlastDigester [], SNP2CAPS [] and SNP Cutter []. None of these tools readily scale to large volumes of NGS data. Bulk design of primer sets to SNPs or other genome targets can be performed using the Primer3 executable []. Although the […]

library_books

LD2SNPing: linkage disequilibrium plotter and RFLP enzyme mining for tag SNPs

2009
BMC Genet
PMCID: 2709117
PMID: 19500380
DOI: 10.1186/1471-2156-10-26

[…] sis. Without the actual data set itself, users are unable to perform LD analysis. However, many types of software exist which provide information for genotyping, e.g. the SNPlex genotyping system [], SNP cutter [], SNP-RFLPing [], and V-MitoSNP []. These programs do not include an LD function though. It is thus still difficult for researchers to narrow down the number of SNPs for performing SNP ge […]


Want to access the full list of citations?
SNP Cutter institution(s)
National Laboratory of Medical Genetics of China, Central South University, Changsha, Hunan, China; Department of Psychiatry, University of Chicago, Chicago, IL, USA
SNP Cutter funding source(s)
This work was supported by a Young Investigator Grant from NARSAD (National Alliance for Research in Schizophrenia and Affective Disorders) and NIH R01 MH65560-01 and R01 MH59535 and by the Chinese State ‘863’ program (2002BA711A07-08, 2002BA711A07-03), ‘973’ program (2001CB510302, 2004CB518601) and National Natural Science Foundation of China (30070410, 30123006, 30371530 and 30340078).

SNP Cutter reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SNP Cutter