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SNP detection software tools | Bisulfite sequencing data analysis

Bisulfite treatment of DNA followed by high-throughput sequencing (Bisulfite-seq) is an important method for studying DNA methylation and epigenetic gene regulation, yet current software tools do not adequately address single nucleotide…
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Bis-SNP
Desktop

Bis-SNP

A package based on the Genome Analysis Toolkit (GATK) map-reduce framework for…

A package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping and accurate DNA methylation calling in bisulfite treated massively parallel sequencing. At an average 30×…

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SMAP
Desktop

SMAP Streamlined Methylation Analysis Pipeline

Allows to extract multiple types of information (such as DMCs, DMRs, SNPs and…

Allows to extract multiple types of information (such as DMCs, DMRs, SNPs and ASM) from various types of RRBS and Bis-seq data. SMAP is designed to be an easy-to-use, one-stop and sophisticated…

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BS-SNPer
Desktop

BS-SNPer

An ultrafast and memory-efficient package named BS-SNPer for the exploration of…

An ultrafast and memory-efficient package named BS-SNPer for the exploration of SNP sites from BS-Seq data. Compared to Bis-SNP, a popular BS-Seq specific SNP caller, BS-SNPer is over 100 times…

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MethylExtract
Desktop

MethylExtract

A user friendly tool to: i) generate high quality, whole genome methylation…

A user friendly tool to: i) generate high quality, whole genome methylation maps and ii) detect sequence variation within the same sample preparation. The program is implemented into a single script…

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Bscall
Desktop

Bscall

Provides a method for bisulfite sequencing data. Bscall was developed as a…

Provides a method for bisulfite sequencing data. Bscall was developed as a variant caller.

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