SNP-o-matic statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SNP-o-matic
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Tool usage distribution map

This map represents all the scientific publications referring to SNP-o-matic per scientific context
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Associated diseases

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Popular tool citations

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SNP-o-matic specifications

Information


Unique identifier OMICS_15114
Name SNP-o-matic
Software type Application/Script, Package/Module
Interface Command line interface
Restrictions to use None
Input data The reference genome sequence, the sequence reads, a list of putative SNPs.
Input format FASTA, FASTQ
Output data The predicted mapping/alignment.
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Source code URL https://codeload.github.com/magnusmanske/snpomatic/tar.gz/v1.0
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Heinrich Magnus Manske

Publication for SNP-o-matic

library_books

SNP-o-matic

2009 Bioinformatics
PMCID: 2735664
PMID: 19574284
DOI: 10.1093/bioinformatics/btp403

SNP-o-matic citation

library_books

Approaches for in silico finishing of microbial genome sequences

2017
Genet Mol Biol
PMCID: 5596377
PMID: 28898352
DOI: 10.1590/1678-4685-GMB-2016-0230

[…] ucleotides) (): is an automated pipeline for assembly correction. Using a paired-end library, the program performs the read remapping using SSAH () and the variant calling and coverage analysis using SNP-o-matic (). The correction of the reference is followed by a new coverage analysis. If the correction promoted an improvement in the coverage, a new iteration commences, and the corrected sequence […]


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SNP-o-matic institution(s)
Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK
SNP-o-matic funding source(s)
This work was supported by the Wellcome Trust, Bill and Melinda Gates Foundation and Medical Research Council.

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