SNP-o-matic statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool SNP-o-matic

Tool usage distribution map

This map represents all the scientific publications referring to SNP-o-matic per scientific context
info info

Associated diseases


Popular tool citations

chevron_left Read alignment chevron_right
Want to access the full stats & trends on this tool?

SNP-o-matic specifications


Unique identifier OMICS_15114
Name SNP-o-matic
Software type Application/Script, Package/Module
Interface Command line interface
Restrictions to use None
Input data The reference genome sequence, the sequence reads, a list of putative SNPs.
Input format FASTA, FASTQ
Output data The predicted mapping/alignment.
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Source code URL
Maintained Yes




No version available



  • person_outline Heinrich Magnus Manske

Publication for SNP-o-matic



2009 Bioinformatics
PMCID: 2735664
PMID: 19574284
DOI: 10.1093/bioinformatics/btp403

SNP-o-matic citation


Approaches for in silico finishing of microbial genome sequences

Genet Mol Biol
PMCID: 5596377
PMID: 28898352
DOI: 10.1590/1678-4685-GMB-2016-0230

[…] ucleotides) (): is an automated pipeline for assembly correction. Using a paired-end library, the program performs the read remapping using SSAH () and the variant calling and coverage analysis using SNP-o-matic (). The correction of the reference is followed by a new coverage analysis. If the correction promoted an improvement in the coverage, a new iteration commences, and the corrected sequence […]

Want to access the full list of citations?
SNP-o-matic institution(s)
Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK
SNP-o-matic funding source(s)
This work was supported by the Wellcome Trust, Bill and Melinda Gates Foundation and Medical Research Council.

SNP-o-matic reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SNP-o-matic