SNP-o-matic specifications
- Unique identifier:
- OMICS_15114
- Software type:
- Application/Script, Package/Module
- Restrictions to use:
- None
- Input format:
- FASTA, FASTQ
- Operating system:
- Unix/Linux
- License:
- GNU General Public License version 3.0
- Version:
- 1.0
- Source code URL:
- https://codeload.github.com/magnusmanske/snpomatic/tar.gz/v1.0
- Name:
- SNP-o-matic
- Interface:
- Command line interface
- Input data:
- The reference genome sequence, the sequence reads, a list of putative SNPs.
- Output data:
- The predicted mapping/alignment.
- Programming languages:
- C++
- Computer skills:
- Advanced
- Stability:
- Stable
- Maintained:
- Yes
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SNP-o-matic distribution
download
SNP-o-matic support
Documentation
- Documentation: http://snpomatic.sourceforge.net/snpomatic_manual.pdf
Maintainer
- Heinrich Magnus Manske <>
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Publications
-
(Manske and Kwiatkowski, 2009)
SNP-o-matic.
Bioinformatics.
PMID: 19574284 DOI: 10.1093/bioinformatics/btp403
Institution(s)
Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK
Funding source(s)
This work was supported by the Wellcome Trust, Bill and Melinda Gates Foundation and Medical Research Council.
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