SNP-PHAGE statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SNP-PHAGE

Tool usage distribution map

This map represents all the scientific publications referring to SNP-PHAGE per scientific context
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SNP-PHAGE specifications


Unique identifier OMICS_15014
Alternative name SNP discovery Pipeline Haplotype Analysis GenBank submissions
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License Other
Computer skills Advanced
Stability No
Phred, Phrap, Consed, MySQL
Maintained No


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Publication for SNP discovery Pipeline Haplotype Analysis GenBank submissions

SNP-PHAGE citation


An Integrated Pipeline of Open Source Software Adapted for Multi CPU Architectures: Use in the Large Scale Identification of Single Nucleotide Polymorphisms

Comp Funct Genomics
PMCID: 2216057
PMID: 18273384
DOI: 10.1155/2007/35604

[…] ne while another pipeline that uses Phrap, CAT, and Polybayes [] was tested with the maize EST dataset optimizing the Polybayes algorithm to work without sequence data quality values. The more recent SNP PHAGE (SNP discovery pipeline with additional features for haplotype analysis and genbank submissions []) is a modification of the PERL package POSA. The novoSNP [] program allows automated, fast […]

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SNP-PHAGE institution(s)
US Department of Agriculture, ARS, Beltsville Agricultural Research Center, Bovine Functional Genomics Laboratory, Beltsville, MD, USA; Bioinformatics and Computational Biology, George Mason University, Manassas, VA, USA; US Department of Agriculture, ARS, Beltsville Agricultural Research Center, Soybean Genomics and Improvement Laboratory, Beltsville, MD, USA

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