SNP-VISTA specifications

Information


Unique identifier OMICS_22819
Name SNP-VISTA
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data A sequence file and a pretty base, optionally accompanied by annotation and a protein alignement for GeneSNP and a BLAST file, optionally accompanied by recombinational points and annotion for EcoSNP.
Input format FASTA+TXT,BLAST+TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Subtools


  • EcoSNP-VISTA
  • GeneSNP-VISTA

Versioning


No version available

Maintainers


  • person_outline VISTA Browser Group
  • person_outline In Dubchak
  • person_outline Len Pennacchio
  • person_outline Philip Hugenholtz
  • person_outline Bernd Hamann

Publication for SNP-VISTA

SNP-VISTA institution(s)
Institute for Data Analysis and Visualization, (IDAV), Department of Computer Science, University of California, Davis, CA, USA; Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; DOE Joint Genome Institute, Walnut Creek, CA, USA
SNP-VISTA funding source(s)
Supported, in part, by the Programs for Genomic Applications grant from the NHLBI/ NIH and the Laboratory Directed Research and Development (LDRD) Program, through the project entitled "Interactive Visualization Methods for Exploration and Comparison of Multi-billion Base Pair Sequence Data".

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