SNP2HLA specifications


Unique identifier OMICS_17675
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data SNP dataset and reference dataset.
Input format bed/bim/fam PLINK format and .bgl.phased/.markers Beagle formatbed/bim/fam PLINK format and .bgl.phased/.markers Beagle format
Operating system Unix/Linux
Computer skills Advanced
Version 1.0.3
Stability Stable
Requirements PLINK, BEAGLE
Maintained Yes



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Publication for SNP2HLA

SNP2HLA institution(s)
Harvard-MIT (Massachusetts Institute of Technology) Division of Health Sciences and Technology, Boston, MA, USA; Division of Genetics, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA, USA; Program in Medical and Population Genetics, Broad Institute of Harvard and MIT, Cambridge, MA, USA; Division of Rheumatology, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA, USA; School of Medicine, University of Virginia, Charlottesville, VA, USA; Partners HealthCare Center for Personalized Genetic Medicine, Boston, MA, USA; Faculty of Medical and Human Sciences, University of Manchester, Manchester, UK; Department of Epidemiology, University Medical Center Utrecht, Utrecht, Netherlands; Department of Medical Genetics, University Medical Center Utrecht, Utrecht, Netherlands
SNP2HLA funding source(s)
Supported by the Howard Hughes Medical Institute (Research Fellowship for Medical Students), the Bill and Melinda Gates Foundation (Collaboration for AIDS Vaccine Discovery sub-award), the National Institutes of Health (K08AR055688 and 1R01AR062886-01).

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