SNP2TFBS pipeline

SNP2TFBS specifications

Information


Unique identifier OMICS_28871
Name SNP2TFBS
Interface Web user interface
Restrictions to use None
Input data A rsID code, a SNP set or a motif.
Input format VCF, BED
Output data A or some TF(s) with score difference or variability plots or a model.
Output format BED,TSV
Computer skills Basic
Stability Stable
Maintained Yes

Subtools


  • SNPViewer
  • SNSelect
  • PWNViewer

SNP2TFBS citation

2016
PMCID: 5006125

[…] cassette oligos (didenko, 2001, cuenca et al., 2013). on the basis of the fluorescence obtained, the allele call data were viewed graphically as a scatter plot for each marker assayed using the snpviewer (http://www.lgcgenomics.com)., hardy-weinberg equilibrium (hwe) was assessed for all polymorphisms in both cases and controls groups by using chi-square test. allele frequencies […]

SNP2TFBS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SNP2TFBS