SNPassoc protocols

SNPassoc specifications

Information


Unique identifier OMICS_10116
Name SNPassoc
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.9-2
Stability Stable
Requirements haplo.stats, survival, mvtnorm, parallel
Maintained Yes

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Documentation


Maintainer


  • person_outline Juan R. González <>

Publication for SNPassoc

SNPassoc IN pipeline

2016
PMCID: 4891883
PMID: 27255376
DOI: 10.1186/s12936-016-1350-2

[…] with one-way analysis of variance (anova). correlation coefficients of the antibody levels were estimated with the pearson correlation. interactions between snp pairs were also assessed with the ‘snpassoc’ package, which determines the effects of interaction by means of log-likelihood ratio tests (lrts)., haplotype blocks were determined with haploview 4.2 using the solid spine of linkage […]

SNPassoc institution(s)
Unit of Biostatistics and Bioinformatics, Epidemiology Service, IDIBELL, Catalan Institute of Oncology, Barcelona, Spain

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