SNPest specifications
Information
| Unique identifier | OMICS_08845 |
|---|---|
| Name | SNPest |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | SNPest takes input generated by the “samtools mpileup -s” command (or equivalent) reporting nucleotides mapped to each position together with read qualities and mapping qualities. |
| Output data | The output is in VCF format with a line per position covered in the genome. |
| Operating system | Unix/Linux, Mac OS |
| Programming languages | C++, Perl |
| License | GNU General Public License version 2.0 |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
Versioning
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Documentation
Maintainer
- person_outline Stinus Lindgreen <>
Publications for SNPest
2014 BMC Res Notes
PMCID: 4203901
PMID: 25294605
DOI: 10.1186/1756-0500-7-698
2010 Nature
PMCID: 3951495
PMID: 20148029
DOI: 10.1038/nature08835
SNPest institution(s)
Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Ole Maaloes Vej, Copenhagen, Denmark
SNPest reviews
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