SNPest specifications


Unique identifier OMICS_08845
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data SNPest takes input generated by the “samtools mpileup -s” command (or equivalent) reporting nucleotides mapped to each position together with read qualities and mapping qualities.
Output data The output is in VCF format with a line per position covered in the genome.
Operating system Unix/Linux, Mac OS
Programming languages C++, Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Stinus Lindgreen <>

SNPest articles

SNPest institution(s)
Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Ole Maaloes Vej, Copenhagen, Denmark

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