SNPest specifications


Unique identifier OMICS_08845
Name SNPest
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data SNPest takes input generated by the “samtools mpileup -s” command (or equivalent) reporting nucleotides mapped to each position together with read qualities and mapping qualities.
Output data The output is in VCF format with a line per position covered in the genome.
Operating system Unix/Linux, Mac OS
Programming languages C++, Perl
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


Add your version



  • person_outline Stinus Lindgreen <>

Publications for SNPest

SNPest institution(s)
Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Ole Maaloes Vej, Copenhagen, Denmark

SNPest reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SNPest