SNPest specifications

Unique identifier:
OMICS_08845
Interface:
Command line interface
Input data:
SNPest takes input generated by the “samtools mpileup -s” command (or equivalent) reporting nucleotides mapped to each position together with read qualities and mapping qualities.
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 2.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Output data:
The output is in VCF format with a line per position covered in the genome.
Programming languages:
C++, Perl
Computer skills:
Advanced
Maintained:
Yes

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SNPest support

Documentation

Maintainer

  • Stinus Lindgreen <>

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Publications

Institution(s)

Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Ole Maaloes Vej, Copenhagen, Denmark

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