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SNPexp specifications

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Unique identifier OMICS_22600
Name SNPexp
Interface Web user interface
Restrictions to use None
Programming languages Perl
License Other
Computer skills Basic
Stability No
Maintained No

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This tool is not available anymore.

Publication for SNPexp

SNPexp in publications

 (29)
PMCID: 5903836
PMID: 29695933
DOI: 10.2147/CMAR.S160080

[…] molecular mechanisms. the genotype data for 270 individuals were collected from hapmap. ercc1 mrna expression levels of lymphoblastoid cell lines from the same 270 individuals were extracted from snpexp. we observed that genotypes of the rs2298881 c>a polymorphism were significantly correlated with decreased ercc1 mrna expression in chinese subjects (p=0.003), africans (p<0.0001), […]

PMCID: 5862573
PMID: 29568352
DOI: 10.18632/oncotarget.23812

[…] from 270 individuals of four ethnic groups (chb, jpt, ceu, and yri) and chd5 mrna expression levels from ebv-transformed b lymphoblastoid cell lines from the same 270 individuals available by snpexp []. finally, least squares analysis of variance (anova) was performed to calculate statistical levels of chd5 transcripts expression according to different haplotypes., all statistical tests […]

PMCID: 5421853
PMID: 27974699
DOI: 10.18632/oncotarget.13848

[…] were not observed in african ancestry in southwest (asw) and ceu, but in asian populations (i.e., han chinese and japanese) (hapmap data rel 27 phase ii+iii). in addition, according to an online snpexp server system (http://app3.titan.uio.no/biotools), significant differences on xpc mrna expression levels among populations carrying the wild homozygous genotypes were observed (student t-test, […]

PMCID: 5057148
PMID: 27725770
DOI: 10.1038/srep35021

[…] in association with cytokine expression., further we performed an in silico analysis of correlation between interleukin and toll-like receptor genotypes and basal gene expression levels utilizing snpexp resource. we constructed haplotypes with the haploview software and analyzed association between check snps in haplotype blocks and mrna expression levels in lymphoblastoid cell lines […]

PMCID: 5042920
PMID: 27733989
DOI: 10.1186/s40064-016-3339-2

[…] (http://www.snpinfo.niehs.nih.gov/cgi-bin/snpinfo/snpfunc.cgi)., we used additional data on rad51 genotypes and mrna levels available online (http://www.app3.titan.uio.no/biotools/help.php?app=snpexp) for the genotype-phenotype association analysis (holm et al. ). we used genome-wide expression arrays (47,294 transcripts) from epstein–barr virus-transformed lymphoblastoid cell lines […]

SNPexp institution(s)
Norwegian PSC Research Center, Clinic for Specialized Medicine and Surgery, Oslo University Hospital Rikshospitalet, Oslo, Norway; Research Institute for Internal Medicine, Clinic for Specialized Medicine and Surgery, Oslo University Hospital Rikshospitalet, Oslo, Norway; Institute for Clinical Molecular Biology, Christian-Albrechts-University Kiel, Kiel, Germany

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