SnpFilt specifications

Information


Unique identifier OMICS_13858
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data NGS raw reads
Output data SNPs
Output format FASTA, CSV, GZ, BCF, CIGARX
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements R, gunzip, zgrep, cut, samtools, bcftools, BWA, SPAdes, LASTZ, caTools
Maintained Yes

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SnpFilt article

SnpFilt institution(s)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia; Centre for Infectious Diseases and Microbiology–Public Health, Institute of Clinical Pathology and Medical Research, Westmead Hospital, NSW, Australia; Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, NSW, Australia
SnpFilt funding source(s)
This study was supported by the grant from National Health and Medical Research Council (1050227).

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