snpGeneSets statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

Tool usage distribution map
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Associated diseases

Associated diseases

snpGeneSets specifications

Information


Unique identifier OMICS_08306
Name snpGeneSets
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.06
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Hao Mei <>

Publication for snpGeneSets

snpGeneSets in publication

PMCID: 5820295
PMID: 29503662
DOI: 10.3389/fgene.2018.00052

[…] common binding motifs for transcription factors (tfs) of foxo4, nfat, tcf3, vsx1 and pou2f1 and microrna of mir-218 (). we extended the exact test of usgsa method with developed software package of snpgenesets to generalize pathway analysis for both gwas and gene expression study (). our analysis of nhgri gwas catalog and gene expression data using snpgenesets evidenced that significant snp […]


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snpGeneSets institution(s)
Center of Biostatistics and Bioinformatics, University of Mississippi Medical Center, Jackson, MS, USA; Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China; Department of Biology, Tougaloo College, Jackson, MS, USA; Department of Neurology, University of Mississippi Medical Center, Jackson, MS, USA

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