SNPGenie specifications


Unique identifier OMICS_10421
Name SNPGenie
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A reference sequence(s) (.FASTA), a Gene Transfer Format (.GTF) file with CDS annotations and an arbitrary number of SNP reports, currently including Geneious (Variations/SNPs Annotations Table) and CLC Genomics Workbench (Annotated Variant File) formats.
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 1.2
Stability Stable
Maintained Yes


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  • person_outline Chase W. Nelson <>

Publication for SNPGenie

SNPGenie institution(s)
Department of Biological Sciences, University of South Carolina, Columbia, SC, USA; Department of Pathobiological Sciences, University of Wisconsin School of Veterinary Medicine, Madison, WI, USA

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