SNPlice specifications

Information


Unique identifier OMICS_06769
Name SNPlice
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Read alignments in (indexed) BAM/SAM format; exon-intron-exon junctions in BED format; single-nucleotide-polymophisms (SNPs) in tabular and VCF format
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.8.0
Stability Stable
Maintained Yes

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Publication for SNPlice

SNPlice institution(s)
McCormick Genomics and Proteomics Center, The George Washington University, WA, DC, USA; Department of Biochemistry and Molecular Medicine, The George Washington University, WA, DC, USA; Department of Pharmacology and Physiology, The George Washington University, WA, DC, USA; Department of Ophthalmology, Georgetown University, School of Medicine, WA, DC, USA; Department of Neurology, Georgetown University, School of Medicine, WA, DC, USA; Department of Biochemistry and Molecular & Cellular Biology, Georgetown University, School of Medicine, WA, DC, USA
SNPlice funding source(s)
This work is supported by MGPC, GWU; NIH National Center for Advancing Translational Sciences [UL1TR000075]; Clinical and Translational Science Institute at Children’s National Medical Center [CTSI-CN]; and the Georgetown University Dean's Pilot [GX4002-753].

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