SNPMeta specifications

Information


Unique identifier OMICS_01923
Name SNPMeta
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A DNA sequence.
Input format FASTA
Output format TSV
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python, Shell (Bash)
Computer skills Advanced
Version 2.0
Stability Stable
Requirements MacOS, Biopython, EMBOSS
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

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Versioning


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Maintainer


  • person_outline Peter Morrell <>

Additional information


A previous version can be found at https://github.com/pmorrell/SNPMeta

Information


Unique identifier OMICS_01923
Name SNPMeta
Interface Web user interface
Restrictions to use None
Input data A file of SNP to annotate.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Peter Morrell <>

Additional information


A previous version can be found at https://github.com/pmorrell/SNPMeta

Publication for SNPMeta

SNPMeta institution(s)
Department of Agronomy & Plant Genetics, University of Minnesota, St. Paul, MN, USA; Hard Winter Wheat Genetics Research Unit, USDA ARS, Kansas State University, Manhattan, KS, USA; Department of Agronomy, Kansas State University, Manhattan, KS, USA
SNPMeta funding source(s)
Supported by the US Department of Agriculture (USDA); partly by the US National Institute for Food and Agriculture (NIFA) (2011-68002-30029); a USDA National Needs Fellowship (USDA NIFA 2011-38420-20068) and in part by the USDA - Agricultural Research Service (Appropriation No. 5430-21000-006-00D) and Kansas State University.

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