SNPper pipeline

SNPper specifications

Information


Unique identifier OMICS_01926
Name SNPper
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No

Taxon


  • Primates
    • Homo sapiens

Maintainer


This tool is not available anymore.

Publication for SNPper

SNPper IN pipelines

 (4)
2013
PMCID: 3635969
PMID: 23633938
DOI: 10.1371/journal.pcbi.1002902

[…] in recent years a number of methods were created for identifying mutations as functionally deleterious. promolign [84], pupasnp finder [85], and raven [86] look for snps affecting transcription, snpper [87] finds and annotates snp locations, conservation, and possible functionalities so that they can be visually assessed, and snpselector [88] and fastsnp [89] assess various snp features […]

2010
PMCID: 2815792
PMID: 20140262
DOI: 10.1371/journal.pone.0009040

[…] tests. stata version 10 statistical software was used for all analyses (statacorp, college station, tx)., gene names, marker positions (base pair – bp) and marker function were identified using the snpper database (http://snpper.chip.org). allele and genotype differences between cases and controls, deviations in hardy-weinberg equilibrium (hwe) and inbreeding coefficients (f) were calculated […]

2010
PMCID: 2815792
PMID: 20140262
DOI: 10.1371/journal.pone.0009040

[…] statistical software was used for all analyses (statacorp, college station, tx)., gene names, marker positions (base pair – bp) and marker function were identified using the snpper database (http://snpper.chip.org). allele and genotype differences between cases and controls, deviations in hardy-weinberg equilibrium (hwe) and inbreeding coefficients (f) were calculated with plink […]

2009
PMCID: 2762536
PMID: 19434427
DOI: 10.1007/s00439-009-0677-y

[…] both store known snps, but specifically attempt to associate them with known transcription factor-binding sites for identification of potential regulatory snps. mapper is a companion tool to the snpper retrieval system and database that locates computationally predicted transcription factor-binding sites (riva and kohane 2002). both polymapr (freimuth et al. 2005) and pupasnp finder (conde […]

SNPper institution(s)
Children's Hospital Informatics Program, Children's Hospital, Harvard Medical School, Boston, MA, USA
SNPper funding source(s)
Supported by grant U01-HL66795 from the National Heart, Lung and Blood Institute of NIH.

SNPper reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SNPper