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SNPranker specifications

Information


Unique identifier OMICS_04394
Name SNPranker
Interface Web user interface
Restrictions to use None
Input format CSV
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Luciano Milanesi

Publications for SNPranker

SNPranker citations

 (2)
library_books

Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives

2014
Biomed Res Int
PMCID: 4165507
PMID: 25254202
DOI: 10.1155/2014/134023

[…] effectiveness of ontology-based data integration is closely tied to the consistency and expressivity of the ontology used in the integration process. Many resources exist that have ontology support: SNPranker [], G2SBC [], NSD [], TMARepDB [], Surface [], and Cell cycle DB [].A useful instrument for ontology exploration has been developed by the European Bioinformatics Institute (EBI), which allo […]

library_books

A review of post GWAS prioritization approaches

2013
Front Genet
PMCID: 3856625
PMID: 24367376
DOI: 10.3389/fgene.2013.00280

[…] functional effect of the SNPs ().FitSNPs calculated a differential expression ratio for all genes in the genome, and prioritize SNPs by the differential expression ratio of their associated genes ().SNPranker 2.0 first annotates the SNPs with different features, and then user a user interactive way to integrate features (). Users can specify the features they want to include and the weight of eac […]


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SNPranker institution(s)
Consiglio Nazionale delle Ricerche - Istituto di Tecnologie Biomediche (CNR-ITB), Segrate, Italy; San Raffaele Telethon Institute for Gene Therapy (HSR-TIGET), Milano, Italy; Parco Tecnologico Padano, Lodi, Italy
SNPranker funding source(s)
Supported by the Italian Ministry of Education and Research (MIUR) through the Flagship (PB05) “InterOmics”, ITALBIONET (RBPR05ZK2Z), HIRMA (RBAP11YS7K) and the European “MIMOMICS” projects.

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