SNPs3D protocols

SNPs3D specifications

Information


Unique identifier OMICS_00163
Name SNPs3D
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for SNPs3D

SNPs3D IN pipelines

 (3)
2017
PMCID: 5461698
PMID: 28587604
DOI: 10.1186/s12881-017-0422-7

[…] n72s, r74w, a116p, e128k, f132l, v187d, l213r, e382k, r495q, e501k, l503p, f686s, g716v, k1336n, l1349q, s1386f, l1389p, r1420c, i1424v, d1471h) and 2 tcf7l2 missense snps (p179h, k323n) (table 2)., snps3d assigns molecular functional effects of nssnps based on structure and sequence analysis. of the 36 nssnps, snps3d svm score was available for only 7 nssnps (kcnj11: 2, abcc8: 3, and tcf7l2: […]

2017
PMCID: 5461698
PMID: 28587604
DOI: 10.1186/s12881-017-0422-7

[…] r1420c, i1424v, d1471h) and 2 tcf7l2 missense snps (p179h, k323n) (table 2)., snps3d assigns molecular functional effects of nssnps based on structure and sequence analysis. of the 36 nssnps, snps3d svm score was available for only 7 nssnps (kcnj11: 2, abcc8: 3, and tcf7l2: 2). of them, two nssnps, i.e., r1420c amino acid substitution of abcc8 gene and k323n amino acid substitution […]

2016
PMCID: 4773746
PMID: 26901225
DOI: 10.3390/cancers8020023

[…] with increased risk of radiation esophagitis. the polymorphism results in amino acid change from a polar and uncharged serine to a nonpolar uncharged glycine. sift (sift score: 0.02), snpeffect and snps3d analysis indicated this amino acid change may have a deleterious effect on protein function. another missense snp, brip1:rs4986764, which was associated with increased risk of radiation […]

SNPs3D institution(s)
Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, Chinakville, MD, USA
SNPs3D funding source(s)
This work was supported in part by NLM grant R01 LM07174.

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