SnugDock statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.


Citations per year

Citations chart

Popular tool citations

chevron_left Structure-based B-cell epitope prediction chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

SnugDock specifications


Unique identifier OMICS_20918
Name SnugDock
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


Add your version


  • person_outline Jeffrey Gray <>

Publication for SnugDock

SnugDock in publications

PMCID: 5923367
PMID: 29642526
DOI: 10.3390/cancers10040112

[…] the rosetta antibody protocol [,,,,]. 72a1 antibody:gp350 dockings were initially aligned using hex 8.0 cuda software [] and further refined using the rosetta snugdock protocol [,,] or the rosetta docking 2 protocol [,,]. the level of humanization for the hu72a1 vr construct […]

PMCID: 5857718
PMID: 29560474
DOI: 10.1016/j.heliyon.2018.e00564

[…] was examined with epitopia software, whereas allergen properties were tested using algpred. the pattern of the tandem epitope binding with anti-gp350/220 antibodies was performed using z-dock and snugdock. the tandem epitope was then overproduced in e. coli strain bl21 as a host cell., our model demonstrated a successfully designed and overproduced tandem epitope. the tandem epitope […]

PMCID: 5557897
PMID: 28811664
DOI: 10.1038/s41598-017-08414-y

[…] therefore, accurate modeling of the bound structures starting from the unbound structures or homology models is critical for improving accuracy. flexible backbone algorithms such as ensembledock and snugdock based on the conformer selection (cs) binding models previously shown to help improve interface quality of the models generated using unbound and homology complexes can be of immense value. […]

PMCID: 5552345
PMID: 28759640
DOI: 10.1371/journal.ppat.1006469

[…] modeling of ab-ag interactions has advanced considerably in recent years and several examples of complexes with close to atomic accuracy have been reported in the literature []. using the snugdock protein-protein docking algorithm [], we obtained an initial model for binding of the peptide to the cdr region of the 2a10 fab fragment (). we then performed, in triplicate, three 50 ns md […]

PMCID: 4575156
PMID: 26381271
DOI: 10.1371/journal.pone.0138220

[…] for some particularly useful or common cases, a number of “remix protocols” have been developed. notable examples include: fold and dock[], which combines symmetric docking with ab initio folding; snugdock[], which combines loop modeling with multibody docking; and rosettaremodel[], which seeks to unify a large number of design-relevant sampling algorithms under one interface. as the number […]

To access a full list of publications, you will need to upgrade to our premium service.

SnugDock institution(s)
Chemical & Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, USA; Program in Molecular & Computational Biophysics, Johns Hopkins University, Baltimore, MD, USA
SnugDock funding source(s)
Supported by National Institute of Health (R01-GM078221) and UCB S. A.

SnugDock reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SnugDock