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SNVer

A statistical tool for calling common and rare variants in analysis of pool or individual next-generation sequencing data. SNVer reports one single overall p-value for evaluating the significance of a candidate locus being a variant, based on which multiplicity control can be obtained. Loci with any (low) coverage can be tested and depth of coverage will be quantitatively factored into final significance calculation. SNVer runs very fast, making it feasible for analysis of whole-exome sequencing data, or even whole-genome sequencing data.

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SNVer forum

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SNVer classification

SNVer specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface, Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
Version:
0.5.3
Maintained:
Yes

SNVer distribution

versioning

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No versioning.

SNVer support

Maintainer

  • Zhi Wei <>

Credits

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Publications

Institution(s)

Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA; The Centre for Applied Genomics (TCAG), the Hospital for Sick Children, Toronto, Canada; Center for Applied Genomics, the Children's Hospital of Philadelphia, Department of Pediatrics, University of Pennsylvania, Philadelphia, PA, USA

Link to literature

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