SNVMix specifications

Information


Unique identifier OMICS_00077
Name SNVMix
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C, Perl
License MIT License
Computer skills Advanced
Version https://github.com/shahcompbio/snvmix/archive/master.zip
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Sohrab Shah <>
  • person_outline Rodrigo Goya <>

SNVMix article

SNVMix citation

2011
PMCID: 3216542

[…] as snp case and 0 in genotype as snp control for the response. we also did the 0 to 2 and 2 to 0 conversion when the minor allele is the reference allele, before roc display and auc calculation. snvmix outputs 3 possibilities, homozygous to reference, heterozygous genotype and homozygous to the non-reference, we added the latter two (ab and bb) together to get the ‘snp possibility' […]

SNVMix institution(s)
Department of Molecular Oncology Breast Cancer Research Program, British Columbia Cancer Research Centre, Vancouver, BC, Canada; Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada; Centre for Translational and Applied Genomics of British Columbia Cancer Agency, Vancouver, BC, Canada; Provincial Health Services Authority Laboratories, Vancouver, BC, Canada; Department of Computer Science, University of British Columbia, Vancouver, BC, Canada
SNVMix funding source(s)
Supported by the Canadian Institutes for Health Research (CIHR), and the Michael Smith Foundation for Health Research (MSFHR) and the Canadian Breast Cancer Foundation.

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