SNVPhyl specifications


Unique identifier OMICS_20895
Name SNVPhyl
Alternative name Single Nucleotide Variant PHYLogenomics
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A collection of microbial WGS datasets, a reference genome and an optional masking file defining regions on the reference genome.
Operating system Unix/Linux
Programming languages Shell (Bash)
License Apache License version 2.0
Computer skills Advanced
Version 1.0.1
Stability Stable
Source code URL
Maintained Yes



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  • person_outline Gary Van Domselaar <>

Publication for Single Nucleotide Variant PHYLogenomics

SNVPhyl institution(s)
National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada; University of Manitoba, Winnipeg, MB, Canada; Health Canada – Bureau of Microbial Hazards, Ottawa, ON, Canada; Lethbridge Research and Development Centre, Lethbridge, AB, Canada; Centers for Disease Control and Prevention, Atlanta, GA, USA; Dalhousie University, Halifax, NS, Canada; BC Public Health Microbiology and Reference Laboratory, Vancouver, BC, Canada; Simon Fraser University, Burnaby, BC, Canada
SNVPhyl funding source(s)
Supported by the Genomics Research and Development Initiative, Genome Canada, and Genome British Columbia.

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