SOAP-HLA specifications

Information


Unique identifier OMICS_27263
Name SOAP-HLA
Alternative name Short Oligonucleotide Analysis Package-Human Leukocyte Antigen
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format BAM
Output data The most reliable HLA type for each gene.
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 1.0
Stability Stable
Requirements GCC
Maintained Yes

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Maintainers


  • person_outline SOAP3 <>
  • person_outline Jun Wang <>
  • person_outline Yingrui Li <>

Publication for Short Oligonucleotide Analysis Package-Human Leukocyte Antigen

SOAP-HLA institution(s)
Science and Technology Department, BGI-Shenzhen, Shenzhen, China; Roche NimbleGen, Inc., Madison, WI, USA; Department of Biology, University of Copenhagen, Copenhagen, Denmark; King Abdulaziz University, Jeddah, Saudi Arabia; The Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark
SOAP-HLA funding source(s)
Supported by the National High Technology Research and Development Program of China (NO.2012AA02A201).

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