SOAP specifications

Unique identifier:
OMICS_00688
Software type:
Toolkit/Suite
Restrictions to use:
None
Output format:
Tab-delimited text, SAM
Programming languages:
C, C++, Perl
Computer skills:
Advanced
Stability:
Beta
Wikipedia:
https://en.wikipedia.org/wiki/Short_Oligonucleotide_Analysis_Package
Name:
Short Oligonucleotide Analysis Package
Interface:
Command line interface
Input format:
FASTA
Operating system:
Unix/Linux
Parallelization:
CUDA
Version:
3.0
Maintained:
Yes

versioning

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SOAP distribution

download

SOAP support

Maintainers

  • SOAP3 <>
  • Tak-Wah Lam <>
  • Yingrui Li <>
  • Ruiqiang Li <>

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Credits

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Publications

Institution(s)

HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong, China; School of Computer Science, National University of Defense Technology, Changsha, Hunan, China; BGI-Shenzhen, Shenzhen, Guangdong, China; Peking-Tsinghua Center for Life Sciences, Biodynamic Optical Imaging Center and School of Life Sciences, Peking University, Beijing, China; Department of Computer Sciences, University of Wisconsin-Madison, Madison, Wisconsin, USA

Funding source(s)

Supported by RGC General Research Fund 10612042, Hong Kong ITF Grant GHP/011/12 and the GRF Grant HKU-713512E.

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