SOAPBarcode specifications

Information


Unique identifier OMICS_20451
Name SOAPBarcode
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
Computer skills Advanced
Version 2
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Xin Zhou <>

Publication for SOAPBarcode

SOAPBarcode in publication

PMCID: 5726475
PMID: 29077841
DOI: 10.1093/gigascience/gix104

[…] alternatively, short hts reads can be assembled into much longer scaffolds, which is a standard practice in de novo genome or transcriptome assembling. in fact, a specific assembly algorithm, soapbarcode, has been developed for recovering full-length barcodes from pooled arthropod samples []., here, we introduce a more straightforward and cost-efficient hts pipeline that generates […]


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SOAPBarcode institution(s)
China National GeneBank, BGI-Shenzhen, Shenzhen, China; College of Life Sciences, Sichuan University, Chengdu, China; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China; School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, UK
SOAPBarcode funding source(s)
Supported by the National High-tech Research and Development Project (863) of China (2012AA021601), by BGI, Yunnan Province (20080A001), the Chinese Academy of Sciences (0902281081, KSCX2-YW-Z-1027), the National Natural Science Foundation of China (31170498), the Ministry of Science and Technology of China (2012FY110800), the University of East Anglia, and the State Key Laboratory of Genetic Resources and Evolution at the Kunming Institute of Zoology.

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