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SOAPdenovo-Trans | De novo transcriptome assembly with short RNA-Seq reads

A de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.

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SOAPdenovo-Trans classification

SOAPdenovo-Trans specifications

Unique identifier:
OMICS_01324
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C, C++
Computer skills:
Advanced
Maintained:
Yes

SOAPdenovo-Trans distribution

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Credits

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Publications

Institution(s)

School of Bioscience and Bioengineering, South China University of Technology, Guangzhou, China; BGI-Shenzhen, Shenzhen, China; HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory and Department of Computer Science, University of Hong Kong, Pokfulam, Hong Kong; Institute of Biomedical Engineering, XiangYa School of Medicine, Central South University, Changsha, China; BGI-tech, BGI-Shenzhen, Shenzhen, China; Department of Medicine, University of Alberta, Edmonton, Canada; Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China; Department of Biological Sciences, University of Alberta, Edmonton, Canada; The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen, Denmark; Department of Biology, University of Copenhagen, Copenhagen, Denmark;Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah, Saudi Arabia

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