SOAPdenovo-Trans specifications

Information


Unique identifier OMICS_01324
Name SOAPdenovo-Trans
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.4
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Yinlong Xie <>

SOAPdenovo-Trans article

SOAPdenovo-Trans citation

2013
PMCID: 3964625

[…] the resulting 2 gb of clean data were processed into subsequent assemblies using soapdenovo_trans (xie et al. 2013) under default parameters. the abundance information was provided directly by soapdenovo_trans, and played no roles in the subsequent analysis steps. a total of 67,785 scaffolds were produced with an average length of 812 bp and n50 of 1,448 bp [see gigadb (stoev et al. […]

SOAPdenovo-Trans institution(s)
School of Bioscience and Bioengineering, South China University of Technology, Guangzhou, China; BGI-Shenzhen, Shenzhen, China; HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory and Department of Computer Science, University of Hong Kong, Pokfulam, Hong Kong; Institute of Biomedical Engineering, XiangYa School of Medicine, Central South University, Changsha, China; BGI-tech, BGI-Shenzhen, Shenzhen, China; Department of Medicine, University of Alberta, Edmonton, Canada; Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China; Department of Biological Sciences, University of Alberta, Edmonton, Canada; The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen, Denmark; Department of Biology, University of Copenhagen, Copenhagen, Denmark;Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah, Saudi Arabia
SOAPdenovo-Trans funding source(s)
Supported by The State Key Development Program for Basic Research of China-973 Program (NO.2011CB809202), Shenzhen Key Laboratory of Transomics Biotechnologies (CXB201108250096A), China National GeneBank and the 1000 plants (1KP) initiative.

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