SOAPec pipeline

SOAPec specifications


Unique identifier OMICS_05197
Name SOAPec
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
Computer skills Advanced
Version 2.01
Stability Stable
Maintained Yes



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SOAPec citation

PMCID: 5726476

[…]  s1). to improve the read quality, we trimmed low-quality bases from both sides of the reads and removed reads with more than 5% of uncalled (“n”) bases. then reads of all libraries were corrected by soapec (version 2.03) [4]. finally, clean reads amounting to 615 gb were obtained for genome assembly., the estimated genome size is 2.76 gb according to k-mer analysis, based on the following formula […]

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