SOAPfusion specifications

Information


Unique identifier OMICS_01358
Name SOAPfusion
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

Versioning


No version available

Maintainers


  • person_outline SOAP3
  • person_outline Siu-Ming Yiu

Publication for SOAPfusion

SOAPfusion citation

library_books

Next generation sequencing in cancer research and clinical application

2013
PMCID: 3599179
PMID: 23406336
DOI: 10.1186/1480-9222-15-4

[…] ly to a single isoform, while Cufflinks [,] and MISO [] construct a likelihood model that best explains all the reads obtained in the experiment. In addition, fusion transcripts can be detected using SOAPfusion, TopHat-Fusion [], BreakFusion [], FusionHunter [], deFuse [], FusionAnalyser [], etc. To obtain a more complete view of cancer genome, an integrative approach to study diverse mutations, t […]

SOAPfusion institution(s)
Department of Computer Science, The University of Hong Kong, Hong Kong, China; BGI-Shenzhen, Shenzhen, China; Department of Biology, University of Copenhagen, Copenhagen, Denmark; King Abdulaziz University, Jeddah, Saudi Arabia; The Novo NordiskFoundation Center for Basic Metabolic Research, University of Copenhagen and Guangzhou Key Laboratory of Cancer Trans-Omics Research, BGI-Guangzhou, Guangzhou, China
SOAPfusion funding source(s)
Supported by Guangdong Innovative Research Team Program [2009010016] and General Research Fund of the Hong Kong Government [HKU 719611E and HKU719709E].

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