SOAPsv specifications
Information
| Unique identifier | OMICS_04230 |
|---|---|
| Name | SOAPsv |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | Perl |
| Computer skills | Advanced |
| Version | 1.02 |
| Stability | Stable |
| Requirements | gcc compiler |
| Maintained | Yes |
Taxon
-
Animals
- Homo sapiens
Versioning
Add your version
Maintainers
- person_outline SOAP3 <>
- person_outline Jian Wang <>
SOAPsv article
library_books
Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly.
2011 Nat Biotechnol
PMID: 21785424
SOAPsv citation
library_books
Identification of Genome-Wide Variations among Three Elite Restorer Lines for Hybrid-Rice
2012
PMCID: 3285608
[…] covered approximately 84.8% of the reference genome (84%–85.99%), indicating a close relationship between the samples and cultivar 9311., snps, indels, and svs were then examined with soapsnp11 and soapsv using a conservative quality filter pipeline [14], yielding 267,383 snps from the genome of ir24, 288,764 snps from that of mh63, and 259,862 snps from that of sh527 (table 3, […]
SOAPsv institution(s)
BGI-Shenzhen, Shenzhen, China; School of Bioscience and Biotechnology, South China University of Technology, Guangzhou, China; Department of Computer Science, The University of Hong Kong, Hong Kong, China; Genome Research Institute, Shenzhen University Medical School, Shenzhen, China; Institute of Human Genetics, University of Aarhus, Aarhus, Denmark; Department of Biology, University of Copenhagen, Copenhagen, Denmark; Department of Genomics of Common Disease, School of Public Health, Imperial College London, London, UK; Department of Epidemiology and Biostatistics, School of Public Health, Imperial College, London, UK; The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen, Denmark
SOAPsv funding source(s)
Supported by a National Basic Research Program of China (973 program no. 2011CB809200), the National Natural Science Foundation of China (30725008; 30890032; 30811130531; 30221004), the Chinese 863 program (2006AA02Z177; 2006AA02Z334; 2006AA02A302;2009AA022707), the Shenzhen Municipal Government of China (grants JC200903190767A; JC200903190772A; ZYC200903240076A; CXB200903110066A; ZYC200903240077A; ZYC200903240076A and ZYC200903240080A), the Ole Rømer grant from the Danish Natural Science Research Council and the Shenzhen Municipal Government and the Local Government of Yantian District of Shenzhen.
SOAPsv reviews
Be the first to review SOAPsv
