Sockeye protocols

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Sockeye specifications

Information


Unique identifier OMICS_07359
Name Sockeye
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 1.3
Stability Stable
Maintained Yes

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Publication for Sockeye

Sockeye in pipeline

2012
PMCID: 3293878
PMID: 22403630
DOI: 10.1371/journal.pone.0032154

[…] elicited with softberry cpgfinder (http://linux1.softberry.com/all.html), and gc content analysis was performed with 200-bp windows using isochore (; www.ebi.ac.uk/tools/emboss/cpgplot/index.html). sockeye was employed to describe gene location. dot matrix analysis was conducted by pipmaker (; http://bio.cse.psu.edu/pipmaker) and lbdot . the program mvista (; http://genome.lbl.gov/vista) […]


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Sockeye in publication

PMCID: 3293878
PMID: 22403630
DOI: 10.1371/journal.pone.0032154

[…] elicited with softberry cpgfinder (http://linux1.softberry.com/all.html), and gc content analysis was performed with 200-bp windows using isochore (; www.ebi.ac.uk/tools/emboss/cpgplot/index.html). sockeye was employed to describe gene location. dot matrix analysis was conducted by pipmaker (; http://bio.cse.psu.edu/pipmaker) and lbdot . the program mvista (; http://genome.lbl.gov/vista) […]


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Sockeye institution(s)
Canada's Michael Smith Genome Sciences Centre, Vancouver, British Columbia, Canada

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