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SODOCK specifications


Unique identifier OMICS_08212
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No


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Publication for SODOCK

SODOCK citations


Genetic algorithm with a crossover elitist preservation mechanism for protein–ligand docking

PMCID: 5597564
PMID: 28905320
DOI: 10.1186/s13568-017-0476-0

[…] ese docking methods. For example, simulated annealing (SA) (Goodsell and Olson ), Genetic algorithm (GA) (Cao and Li ; Jones et al. ; Thomsen ), Lamarckian genetic algorithm (LGA) (Fuhrmann et al. ), SODOCK (Chen et al. ; Jason et al. ; Ng et al. ), and artificial bee colony algorithm (ABC) (Uehara et al. ). However, to develop an efficient and reliable search algorithm is still a challenge for do […]


Advances and Challenges in Protein Ligand Docking

Int J Mol Sci
PMCID: 2996748
PMID: 21152288
DOI: 10.3390/ijms11083016

[…] , movements of a ligand mode through the search space are guided by the information of the best positions of its neighbors. Examples of docking programs that use swarm optimization algorithms include SODOCK [], Tribe-PSO [], [email protected] [], and PLANTS []. […]

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SODOCK institution(s)
Department of Information Engineering and Computer Science, Feng Chia University, Taichung, Taiwan

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