SPIRE specifications

Information


Unique identifier OMICS_13214
Name Software for Polymorphism Identification Regulating Expression
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data RNA-seq reads (barcoded reads, non-itered reads or pre-itered), gene annotation and gene sequences
Input format VCF, HAPMAP, PLINK, GFF3/GTF2, FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python, R, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements Perl
Maintained Yes

Taxon


  • Animals
    • Caenorhabditis elegans

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Documentation


Maintainer


  • person_outline Ivan Kel <>

SPIRE article

SPIRE institution(s)
Instituto di Tecnologie Biomediche, Milano, Italy; Max Delbruck Center for Molecular Medicine, Berlin Institute for Medical Systems Biology, Berlin, Germany; Dipartimento di Biochimica e Farmacologia Molecolare, Istituto di Ricerche Farmacologiche, Milan, Italy; Dipartimento di Informatica Sistemistica e Comunicazione, Universita degli studi di Milano-Biccoca, Milano, Italy; Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology and Department of Internal Medicine III, University of Heidelberg, Heidelberg, Germany
SPIRE funding source(s)
This work was supported by the Italian Flagship Initiative Interomics (PB05).

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