Allows to analyze, compare, and visualize next generation sequencing (NGS) data. CLC Genomics Workbench offers a complete and customizable solution for genomics, transcriptomics, epigenomics, and metagenomics. The software enables to generate custom workflows, which can combine quality control steps, adapter trimming, read mapping, variant detection, and multiple filtering and annotation steps into a pipeline.
Offers an intuitive user interface and built-in workflows for a variety of genomic applications that guide researchers though every step of the analysis process. Partek Genomics Suite gives biologists, bioinformaticists, and statisticians a single, integrated solution for trustworthy results with a user-friendly interface, comprehensive workflows, and ability to support all next generation sequencing, microarray, and qPCR platforms.
Allows next-generation sequencing (NGS) assembly, alignment, and analysis. DNASTAR Genomics Suite allows users to perform multi sample genome scale analysis on data for genomic variation gene expression and regulation. The software supports several all major NGS data types. Users can analyse multiple projects types together. It also includes tools for core molecular biology work and for structural biology research.
Leverages years of customer feedback and development for analysis tools for SOLiD system data, to enable faster translation of next-generation data to biologically meaningful results. Designed to match the accuracy of the next generation 5500 Genetic Analyzers with Exact Call Chemistry (ECC), LifeScope streamlines your data analysis.
Supplies tools for the analysis and visualization of genomic data. JMP Genomics offers features for genomic selection for crop improvement, pharmacogenomics, expression, statistical genetics, next-gen sequencing, linkage mapping as well as predictive modeling. The software allows the analysis of rare and common variants, detection of differential expression patterns, identification of signals in next-generation sequencing data, discovery of reliable biomarker profiles, and visualization of patterns.
Analyses next generation sequencing (NGS) data. ANGSD can handle a number of different input types from mapped reads to imputed genotype probabilities. Most methods take genotype uncertainty into account instead of basing the analysis on called genotypes. The tool is especially useful for low and medium depth data. The tool allows the user to choose between combinations of existing methods and can perform analysis that is not implemented elsewhere.
A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data for microbial sized genomes. breseq reports single-nucleotide mutations, point insertions and deletions, large deletions, and new junctions supported by mosaic reads (such as those produced by new mobile element insertions) in an annotated HTML format.