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Solas | Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

Detects and quantify alternative splicing (AS) events in RNA-Seq experiments. Solas is an R package that is composed of three different functions: (i) DASI (Differential Alternative Splicing Index), for the detection of alternative splicing events differentiating two conditions; (ii) CASI (Cell Alternative Splicing Index), for the identification of genes and exons which are part of an AS event; and (iii) POEM (Proportion Estimation) for the quantification of the relative proportion of different isoforms.

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Solas forum

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Solas classification

Solas specifications

Unique identifier:
OMICS_01339
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Stability:
Stable

Solas distribution

versioning

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No versioning.

Solas support

Maintainer

  • Hugues Richard <>

Credits

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Publications

Institution(s)

Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany; International Max Planck Research School for Computational Biology and Scientific Computing, Berlin, Germany; Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Berlin, Germany

Funding source(s)

Supported by Max Planck Society and the European Union [AnEUploidy (LSHG-CT-2006-037627)].

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