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SolexaQA | At-a-glance quality assessment of Illumina second-generation sequencing data

A user-friendly software package designed to generate detailed statistics and at-a-glance graphics of sequence data quality both quickly and in an automated fashion. SolexaQA contains associated software to trim sequences dynamically using the quality scores of bases within individual reads. It produces standardized outputs within minutes, thus facilitating ready comparison between flow cell lanes and machine runs, as well as providing immediate diagnostic information to guide the manipulation of sequence data for downstream analyses.

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SolexaQA forum

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SolexaQA classification

SolexaQA specifications

Unique identifier:
OMICS_01078
Interface:
Command line interface
Input format:
FASTQ
Biological technology:
Illumina, Life Technologies, Roche
Programming languages:
Perl, R
Computer skills:
Advanced
Requirements:
Matrix2png, GD graphics
Software type:
Package/Module
Restrictions to use:
None
Output format:
FASTQ, PDF, text
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Stability:
Stable
Maintained:
Yes

Subtools

  • DynamicTrim

SolexaQA distribution

versioning

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No versioning.

SolexaQA support

Maintainer

  • Murray Cox <>

Credits

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Publications

Institution(s)

Institute of Molecular BioSciences, Massey University, New Zealand; The Allan Wilson Centre for Molecular Ecology and Evolution, New Zealand; The Bio-Protection Research Centre, New Zealand; Institute of Veterinary, Animal and Biomedical Sciences, Massey University, New Zealand; Massey Genome Service, Massey University New Zealand

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