SOLiD BioScope Software pipeline

SOLiD BioScope Software specifications

Information


Unique identifier OMICS_19505
Name SOLiD BioScope Software
Alternative name BioScope
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use License purchase required
Biological technology Life Technologies
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Stability Stable
Maintained Yes

Download


Versioning


Add your version

SOLiD BioScope Software IN pipelines

 (3)
2017
PMCID: 5319761
PMID: 28222152
DOI: 10.1371/journal.pone.0171988

[…] barcode trimming, we assessed the quality of the sequencing data using fastqc software. the data were mapped to the reference comprising 980 repeat sequences presented in the mus musculus genome. bioscope software version 1.3 was used for mapping. read counts per repeat family were normalized by library size and then log-transformed. to estimate tumour-associated gene coverage, the data […]

2012
PMCID: 3360038
PMID: 22655034
DOI: 10.1371/journal.pone.0037164

[…] inter-varietal snp analysis across three cultivars: khalas, fahal, and sukry. three runs of solid lmp reads for each cultivar (about 60 gb) were mapped to the reference mt genome (khalas) by using bioscope software (version 1.3). the mapping results were then used for snp identification based on a bayesian algorithm according to the bioscope software user guide., we identified repetitive […]

2012
PMCID: 3415456
PMID: 22912594
DOI: 10.1371/journal.pgen.1002875

[…] experimental sample were mapped to the two published genome sequences of a. niger (jgi a. niger version 3.0 unmasked assembly scaffolds and gene annotation and cadre a. niger assembly) using the bioscope 1.3.1 whole transcriptome pipeline (lifetechnologies). this included the initial filtering of reads against a collection of published a. niger rrna sequences prior to mapping (genbank [60] […]

SOLiD BioScope Software reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SOLiD BioScope Software