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Somatic cancer mutation databases | Genome variation analysis

High-throughput DNA sequencing has revolutionized the study of cancer genomics with numerous discoveries that are relevant to cancer diagnosis and treatment. The latest sequencing and analysis methods have successfully identified somatic…
TCGA Data Portal
Dataset

TCGA Data Portal The Cancer Genome Atlas Data Portal

Generates, analyzes, and makes available genomic sequence, expression,…

Generates, analyzes, and makes available genomic sequence, expression, methylation, and copy number variation (CNV) data on over 11,000 individuals who represent over 30 different types of cancer.…

COSMIC
Dataset

COSMIC Catalogue Of Somatic Mutations In Cancer

Enables to explore the impact of somatic mutations in human cancer. COSMIC is a…

Enables to explore the impact of somatic mutations in human cancer. COSMIC is a database system that collects these somatic mutation data from a variety of public sources into one standardized…

VarSome
Dataset

VarSome

A knowledge base and aggregator for human genomic variants. VarSome gives fast…

A knowledge base and aggregator for human genomic variants. VarSome gives fast access to more than 17 billion items of variant and gene annotation sourced from public databases. It also provides…

DoCM
Dataset

DoCM Database of Curated Mutations in Cancer

Enables to aggregate, store, and track biologically important cancer variants…

Enables to aggregate, store, and track biologically important cancer variants for the cancer research community. DoCM is an open resource that provides an easy access to a current and accurate list…

ICGC
Dataset

ICGC International Cancer Genome Consortium

A comprehensive description of genomic, transcriptomic and epigenomic changes…

A comprehensive description of genomic, transcriptomic and epigenomic changes in 50 different tumor types and/or subtypes which are of clinical and societal importance across the globe. The ICGC…

HGMD
Dataset

HGMD Human Gene Mutation Database

Represents an attempt to collate known (published) gene lesions responsible for…

Represents an attempt to collate known (published) gene lesions responsible for human inherited disease. HGMD® has been an essential tool in analyzing the genomes of thousands of individuals and is…

DIRECT
Dataset

DIRECT DNA-mutation Inventory to Refine and Enhance Cancer Treatment

Provides clinically relevant somatic mutations. DIRECT enables a genetically…

Provides clinically relevant somatic mutations. DIRECT enables a genetically informed approach to cancer medicine by providing clinicians access to tumor gene therapy-response information based on…

BreCAN-DB
Dataset

BreCAN-DB BREakpoint profiles of CANcer genomes DataBase

A browsable repository of personalized cancer DNA breakpoint profiles mapped…

A browsable repository of personalized cancer DNA breakpoint profiles mapped over the entire genomes of 99 cancer and matched control pairs from five cancer types viz. glioblastoma multiforme (GBM),…

CGI
Web

CGI Cancer Genome Interpreter

Supports the identification of therapeutically actionable genomic alterations…

Supports the identification of therapeutically actionable genomic alterations in tumors. CGI (i) identifies validated oncogenic alterations in a tumor, (ii) predicts the effect of the remaining…

CancerGD
Dataset

CancerGD Cancer Genetic Dependencies Database

Integrates genotypic profiling with largescale loss-of-function genetic screens…

Integrates genotypic profiling with largescale loss-of-function genetic screens in tumor cell lines to identify such genetic dependencies. CancerGD provides tools for searching, visualizing, and…

SEECancer
Dataset

SEECancer Somatic Events in Evolution of Cancer genome

Provides a comprehensive resource of cancer evolutionary stage-specific events…

Provides a comprehensive resource of cancer evolutionary stage-specific events and their temporal orders. SEECancer is an online database containing over 1200 cancer evolutionary stage-specific…

CTD2 Data Portal
Dataset

CTD2 Data Portal Cancer Target Discovery And Development Data Portal

Compiles network-generated summaries about key cancer biology findings and…

Compiles network-generated summaries about key cancer biology findings and cancer-relevant results related to proteins, genes and compounds. The Cancer Target Discovery and Development Data Portal is…

SomaticCancerAl…
Desktop

SomaticCancerAlterations

Collects mutational data of several tumor types, currently focusing on the TCGA…

Collects mutational data of several tumor types, currently focusing on the TCGA call sets, and aims for a tight integration with R and Bioconductor workflows. Over time, more studies will be added,…

BioMuta
Dataset

BioMuta

A curated single-nucleotide variation (SNV) and disease association database…

A curated single-nucleotide variation (SNV) and disease association database where the variations are mapped to the genome/protein/gene. BioMuta has 26 cancer types with 13,896 small-scale and…

Linked TCGA
Dataset

Linked TCGA Linked Cancer Genome Atlas Database

Provides Linked Open Data in order to facilitate the querying and live…

Provides Linked Open Data in order to facilitate the querying and live integration of Cancer datasets from multiple sources via remote SPARQL query processing. Linked TCGA publishes different types…

CGTD
Dataset

CGTD Cancer Gene Trust Daemon

An online network for sharing somatic cancer genomic and clinical data from…

An online network for sharing somatic cancer genomic and clinical data from around the world, making the data accessible for research use in real time. CGTD provides a basic HTML interface and…

Genome Trax
Dataset

Genome Trax

A comprehensive compilation of variant knowledge that is made available for…

A comprehensive compilation of variant knowledge that is made available for download for easy integration into your own custom variant analysis pipeline for human whole genome, exome and targeted…

HCAD
Dataset

HCAD Human Chromosome Aberration Database

Gathers textual and comprehensive information of registered genes. HCAD…

Gathers textual and comprehensive information of registered genes. HCAD supplies over 700 breakpoints and integrates literature associations to about 800 genes from 2000 cytogenetically different…

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